Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs1448219 chr2:46407928 A/G 6.87E-7 503 31.62 31.35 13.83 KM Plot
THCA rs145040930 chr10:131976957 CTTCA/C 1.23E-5 501 31.47 32.37 27.18 KM Plot
THCA rs145062782 chr13:108910836 C/T 8.72E-7 494 31.28 33.97 30.57 KM Plot
THCA rs145127609 chr7:32769702 C/T 0.000105 495 31.45 32.9 31.97 KM Plot
THCA rs145229491 chr3:53935521 TA/T 2.75E-6 503 31.47 31.93 24.75 KM Plot
THCA rs145412544 chr3:53908012 C/T 3.62E-6 494 31.67 31.77 24.75 KM Plot
THCA rs145528842 chr16:79269432 T/TA 0 484 31.5 31.97 14.98 KM Plot
THCA rs146093840 chr12:132302780 A/G 0.000146 489 31.73 27.08 47.98 KM Plot
THCA rs146250260 chr5:1611429 T/C 8.5E-8 496 31.3 34.43 24.53 KM Plot
THCA rs1467403 chr6:133089952 T/A 1.27E-6 497 31.47 33.48 30.78 KM Plot
THCA rs1467404 chr6:133090141 A/G 1.35E-6 503 30.53 33.48 31.47 KM Plot
THCA rs146775860 chr10:81672062 GAAT/G 2.43E-9 494 31.7 31.45 14.52 KM Plot
THCA rs147116549 chr14:23545085 T/G 4.88E-15 500 31.68 32.77 12.97 KM Plot
THCA rs147198361 chr3:53908041 C/T 3.57E-6 495 31.6 31.77 24.75 KM Plot
THCA rs147232343 chr10:94773927 C/CT 5.21E-12 495 31.47 32.43 16.1 KM Plot